Index

A

alignment_tools.core module, [1]

B

batch_find_sequence_start_end() (in module alignment_tools.core), [1]

C

calculate_distance_from_ref_point() (in module alignment_tools.core), [1] calculate_SASA_from_alphafold_pdb() (in module alignment_tools.core), [1]

calculte_conservation_scores_per_residue() (in module alignment_tools.core), [1] convert_aln2fasta() (in module alignment_tools.core), [1]

D

download_alphafold_pdb_from_uniprot_id() (in module alignment_tools.core), [1]

F

find_max_tuple() (in module alignment_tools.core), [1] find_min_tuple() (in module alignment_tools.core), [1]

find_motif_positions() (in module alignment_tools.core), [1] find_peptide_positions_within_full_sequence() (in module alignment_tools.core), [1] find_residue_position() (in module alignment_tools.core), [1]

G

get_Cys_sasa_per_protein() (in module alignment_tools.core), [1] get_domain_part() (in module alignment_tools.core), [1]

get_matching_peptides_index() (in module alignment_tools.core), [1] get_min_max_residueIDs_from_reference_residue() (in module alignment_tools.core), [1] get_peptides_list_by_index() (in module alignment_tools.core), [1]

M

make_dictionary_seqs() (in module alignment_tools.core), [1] make_fasta_file() (in module alignment_tools.core), [1] make_input_data() (in module alignment_tools.core), [1]

make_interproscan_annotaiton() (in module alignment_tools.core), [1] module alignment_tools.core, [1]

P

parse_fasta_sequences() (in module alignment_tools.core), [1]

PDB2dataFrame() (in module alignment_tools.core), [1]

R

replace_scores_in_aligned_values() (in module alignment_tools.core), [1]

run_clustal() (in module alignment_tools.core), [1] run_interproscan() (in module alignment_tools.core), [1]